Detailed information of SNP:
|
SNP ID:
sf0404310115(Gbrowse)
Chromosome: chr04 Position: 4310115 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 72.56% | 27.44% |
| All Indica | 799 | 85.73% | 14.27% |
| All Japonica | 492 | 49.59% | 50.41% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 333 | 55.26% | 44.74% |
| Tropical Japonica | 91 | 23.08% | 76.92% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404310115 | A->T | INTERGENIC | None |