Detailed information of SNP:
|
SNP ID:
sf0404310849(Gbrowse)
Chromosome: chr04 Position: 4310849 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 92.00% | 8.00% |
| All Indica | 794 | 89.55% | 10.45% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 211 | 87.68% | 12.32% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404310849 | G->C | INTERGENIC | None |