Detailed information of SNP:
|
SNP ID:
sf0404311055(Gbrowse)
Chromosome: chr04 Position: 4311055 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 93.59% | 6.41% |
| All Indica | 784 | 91.20% | 8.80% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 371 | 97.30% | 2.70% |
| Indica II | 207 | 90.82% | 9.18% |
| Indica Intermediate | 206 | 80.58% | 19.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404311055 | C->T | INTERGENIC | None |