Detailed information of SNP:
|
SNP ID:
sf0404323063(Gbrowse)
Chromosome: chr04 Position: 4323063 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 51.32% | 48.68% |
| All Indica | 785 | 23.82% | 76.18% |
| All Japonica | 494 | 97.57% | 2.43% |
| Aus | 65 | 29.23% | 70.77% |
| Indica I | 373 | 5.09% | 94.91% |
| Indica II | 205 | 49.27% | 50.73% |
| Indica Intermediate | 207 | 32.37% | 67.63% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404323063 | C->T | INTERGENIC | None |