Detailed information of SNP:
|
SNP ID:
sf0404336979(Gbrowse)
Chromosome: chr04 Position: 4336979 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 53.86% | 46.14% |
| All Indica | 786 | 79.39% | 20.61% |
| All Japonica | 491 | 7.74% | 92.26% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 208 | 53.85% | 46.15% |
| Indica Intermediate | 206 | 70.87% | 29.13% |
| Temperate Japonica | 333 | 1.50% | 98.50% |
| Tropical Japonica | 91 | 31.87% | 68.13% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404336979 | G->T | LOC_Os04g08150(LOC_Os04g08150.1) | Non-Synonymous SNP |