Detailed information of SNP:
|
SNP ID:
sf0404346219(Gbrowse)
Chromosome: chr04 Position: 4346219 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 58.76% | 41.24% |
| All Indica | 796 | 90.45% | 9.55% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404346219 | G->C | LOC_Os04g08180(LOC_Os04g08180.1) | INTRON |