Detailed information of SNP:
|
SNP ID:
sf0404346419(Gbrowse)
Chromosome: chr04 Position: 4346419 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 79.67% | 20.33% |
| All Indica | 798 | 75.44% | 24.56% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 51 | 17.65% | 82.35% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 210 | 53.33% | 46.67% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404346419 | C->T | LOC_Os04g08180(LOC_Os04g08180.1) | INTRON |