Detailed information of SNP:
|
SNP ID:
sf0404347444(Gbrowse)
Chromosome: chr04 Position: 4347444 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1328 | 84.19% | 15.81% |
| All Indica | 726 | 78.65% | 21.35% |
| All Japonica | 488 | 96.72% | 3.28% |
| Aus | 62 | 61.29% | 38.71% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 191 | 45.55% | 54.45% |
| Indica Intermediate | 161 | 70.19% | 29.81% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404347444 | A->G | LOC_Os04g08180(LOC_Os04g08180.1) | Synonymous |