Detailed information of SNP:
|
SNP ID:
sf0404347452(Gbrowse)
Chromosome: chr04 Position: 4347452 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 58.58% | 41.42% |
| All Indica | 793 | 89.79% | 10.21% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 209 | 88.04% | 11.96% |
| Indica Intermediate | 209 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404347452 | A->G | LOC_Os04g08180(LOC_Os04g08180.1) | INTRON |