Detailed information of SNP:
|
SNP ID:
sf0404348919(Gbrowse)
Chromosome: chr04 Position: 4348919 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 83.13% | 16.87% |
| All Indica | 775 | 81.42% | 18.58% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 205 | 46.34% | 53.66% |
| Indica Intermediate | 195 | 83.59% | 16.41% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404348919 | T->C | LOC_Os04g08190(LOC_Os04g08190.1) | Non-Synonymous SNP |