Detailed information of SNP:
|
SNP ID:
sf0404375157(Gbrowse)
Chromosome: chr04 Position: 4375157 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 62.52% | 37.48% |
| All Indica | 773 | 37.52% | 62.48% |
| All Japonica | 488 | 95.90% | 4.10% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 371 | 4.85% | 95.15% |
| Indica II | 203 | 81.77% | 18.23% |
| Indica Intermediate | 199 | 53.27% | 46.73% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 88 | 86.36% | 13.64% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404375157 | C->T | INTERGENIC | None |