Detailed information of SNP:
|
SNP ID:
sf0404376365(Gbrowse)
Chromosome: chr04 Position: 4376365 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 51.00% | 49.00% |
| All Indica | 788 | 78.93% | 21.07% |
| All Japonica | 488 | 6.76% | 93.24% |
| Aus | 64 | 37.50% | 62.50% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 209 | 74.16% | 25.84% |
| Indica Intermediate | 206 | 53.40% | 46.60% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 85 | 18.82% | 81.18% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404376365 | A->G | INTERGENIC | None |