Detailed information of SNP:
|
SNP ID:
sf0404383911(Gbrowse)
Chromosome: chr04 Position: 4383911 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 60.51% | 39.49% |
| All Indica | 768 | 84.77% | 15.23% |
| All Japonica | 479 | 18.58% | 81.42% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 203 | 85.22% | 14.78% |
| Indica Intermediate | 193 | 65.80% | 34.20% |
| Temperate Japonica | 327 | 4.59% | 95.41% |
| Tropical Japonica | 89 | 58.43% | 41.57% |
| Japonica Intermediate | 63 | 34.92% | 65.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404383911 | G->A | INTERGENIC | None |