Detailed information of SNP:
|
SNP ID:
sf0404388875(Gbrowse)
Chromosome: chr04 Position: 4388875 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 68.44% | 31.56% |
| All Indica | 779 | 92.43% | 7.57% |
| All Japonica | 476 | 26.47% | 73.53% |
| Aus | 64 | 78.12% | 21.88% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 197 | 82.74% | 17.26% |
| Temperate Japonica | 332 | 9.34% | 90.66% |
| Tropical Japonica | 83 | 71.08% | 28.92% |
| Japonica Intermediate | 61 | 59.02% | 40.98% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404388875 | T->C | LOC_Os04g08230(LOC_Os04g08230.1) | INTRON |