Detailed information of SNP:
|
SNP ID:
sf0404388948(Gbrowse)
Chromosome: chr04 Position: 4388948 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 68.31% | 31.69% |
| All Indica | 778 | 93.06% | 6.94% |
| All Japonica | 477 | 25.79% | 74.21% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 196 | 82.65% | 17.35% |
| Temperate Japonica | 332 | 8.13% | 91.87% |
| Tropical Japonica | 86 | 69.77% | 30.23% |
| Japonica Intermediate | 59 | 61.02% | 38.98% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404388948 | A->G | LOC_Os04g08230(LOC_Os04g08230.1) | INTRON |