Detailed information of SNP:
|
SNP ID:
sf0404390216(Gbrowse)
Chromosome: chr04 Position: 4390216 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 66.35% | 33.65% |
| All Indica | 751 | 87.35% | 12.65% |
| All Japonica | 483 | 31.26% | 68.74% |
| Aus | 63 | 71.43% | 28.57% |
| Indica I | 370 | 95.41% | 4.59% |
| Indica II | 195 | 91.79% | 8.21% |
| Indica Intermediate | 186 | 66.67% | 33.33% |
| Temperate Japonica | 332 | 9.94% | 90.06% |
| Tropical Japonica | 88 | 87.50% | 12.50% |
| Japonica Intermediate | 63 | 65.08% | 34.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404390216 | T->C | INTERGENIC | None |