Detailed information of SNP:
|
SNP ID:
sf0404390568(Gbrowse)
Chromosome: chr04 Position: 4390568 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 65.05% | 34.95% |
| All Indica | 764 | 84.95% | 15.05% |
| All Japonica | 483 | 30.64% | 69.36% |
| Aus | 62 | 75.81% | 24.19% |
| Indica I | 371 | 94.61% | 5.39% |
| Indica II | 198 | 86.87% | 13.13% |
| Indica Intermediate | 195 | 64.62% | 35.38% |
| Temperate Japonica | 332 | 9.94% | 90.06% |
| Tropical Japonica | 86 | 82.56% | 17.44% |
| Japonica Intermediate | 65 | 67.69% | 32.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404390568 | T->C | INTERGENIC | None |