Detailed information of SNP:
|
SNP ID:
sf0404402078(Gbrowse)
Chromosome: chr04 Position: 4402078 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 56.51% | 43.49% |
| All Indica | 797 | 56.09% | 43.91% |
| All Japonica | 494 | 66.80% | 33.20% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 373 | 92.49% | 7.51% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 334 | 90.72% | 9.28% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 66 | 34.85% | 65.15% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404402078 | T->C | INTERGENIC | None |