Detailed information of SNP:
|
SNP ID:
sf0404440128(Gbrowse)
Chromosome: chr04 Position: 4440128 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 57.36% | 42.64% |
| All Indica | 799 | 33.54% | 66.46% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 62 | 35.48% | 64.52% |
| Indica I | 375 | 5.87% | 94.13% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404440128 | A->G | INTERGENIC | None |