Detailed information of SNP:
|
SNP ID:
sf0404440973(Gbrowse)
Chromosome: chr04 Position: 4440973 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 54.13% | 45.87% |
| All Indica | 787 | 76.87% | 23.13% |
| All Japonica | 492 | 15.24% | 84.76% |
| Aus | 62 | 80.65% | 19.35% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 211 | 52.13% | 47.87% |
| Indica Intermediate | 203 | 65.52% | 34.48% |
| Temperate Japonica | 333 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 65 | 55.38% | 44.62% |
| Group VI/Aromatic | 9 | 33.33% | 66.67% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404440973 | G->A | INTERGENIC | None |