Detailed information of SNP:
|
SNP ID:
sf0404442648(Gbrowse)
Chromosome: chr04 Position: 4442648 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 83.95% | 16.05% |
| All Indica | 795 | 85.79% | 14.21% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 210 | 79.05% | 20.95% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404442648 | G->A | INTERGENIC | None |