Detailed information of SNP:
|
SNP ID:
sf0404443483(Gbrowse)
Chromosome: chr04 Position: 4443483 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 90.49% | 9.51% |
| All Indica | 795 | 90.94% | 9.06% |
| All Japonica | 493 | 94.12% | 5.88% |
| Aus | 65 | 60.00% | 40.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404443483 | G->A | INTERGENIC | None |