Detailed information of SNP:
|
SNP ID:
sf0404459182(Gbrowse)
Chromosome: chr04 Position: 4459182 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 92.12% | 7.88% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 493 | 80.93% | 19.07% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 92.49% | 7.51% |
| Tropical Japonica | 93 | 37.63% | 62.37% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 7 | 57.14% | 42.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404459182 | C->T | INTERGENIC | None |