Detailed information of SNP:
|
SNP ID:
sf0404466760(Gbrowse)
Chromosome: chr04 Position: 4466760 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1273 | 83.97% | 16.03% |
| All Indica | 660 | 70.45% | 29.55% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 263 | 80.61% | 19.39% |
| Indica II | 208 | 58.65% | 41.35% |
| Indica Intermediate | 189 | 69.31% | 30.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 8 | 62.50% | 37.50% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404466760 | C->T | LOC_Os04g08370(LOC_Os04g08370.1) | Non-Synonymous SNP |