Detailed information of SNP:
|
SNP ID:
sf0404470049(Gbrowse)
Chromosome: chr04 Position: 4470049 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 94.88% | 5.12% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 485 | 86.39% | 13.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 94.85% | 5.15% |
| Tropical Japonica | 88 | 51.14% | 48.86% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404470049 | G->C | INTERGENIC | None |