Detailed information of SNP:
|
SNP ID:
sf0404500548(Gbrowse)
Chromosome: chr04 Position: 4500548 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 88.87% | 11.13% |
| All Indica | 792 | 90.91% | 9.09% |
| All Japonica | 485 | 83.92% | 16.08% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 205 | 96.59% | 3.41% |
| Temperate Japonica | 330 | 93.64% | 6.36% |
| Tropical Japonica | 91 | 49.45% | 50.55% |
| Japonica Intermediate | 64 | 82.81% | 17.19% |
| Group VI/Aromatic | 9 | 88.89% | 11.11% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404500548 | T->C | INTERGENIC | None |