Detailed information of SNP:
|
SNP ID:
sf0404512830(Gbrowse)
Chromosome: chr04 Position: 4512830 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.19% | 44.81% |
| All Indica | 799 | 30.04% | 69.96% |
| All Japonica | 495 | 94.34% | 5.66% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 2.67% | 97.33% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404512830 | T->C | INTERGENIC | None |