Detailed information of SNP:
|
SNP ID:
sf0404513121(Gbrowse)
Chromosome: chr04 Position: 4513121 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 91.97% | 8.03% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 496 | 80.65% | 19.35% |
| Aus | 58 | 91.38% | 8.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404513121 | C->T | INTERGENIC | None |