Detailed information of SNP:
|
SNP ID:
sf0404516058(Gbrowse)
Chromosome: chr04 Position: 4516058 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 68.71% | 31.29% |
| All Indica | 799 | 68.46% | 31.54% |
| All Japonica | 495 | 73.33% | 26.67% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 30.99% | 69.01% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 333 | 86.19% | 13.81% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404516058 | C->A | INTERGENIC | None |