Detailed information of SNP:
|
SNP ID:
sf0404523592(Gbrowse)
Chromosome: chr04 Position: 4523592 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 96.72% | 3.28% |
| All Indica | 765 | 96.08% | 3.92% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 55 | 78.18% | 21.82% |
| Indica I | 356 | 94.10% | 5.90% |
| Indica II | 207 | 97.10% | 2.90% |
| Indica Intermediate | 202 | 98.51% | 1.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404523592 | T->C | INTERGENIC | None |