Detailed information of SNP:
|
SNP ID:
sf0404523637(Gbrowse)
Chromosome: chr04 Position: 4523637 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1180 | 55.17% | 44.83% |
| All Indica | 607 | 29.49% | 70.51% |
| All Japonica | 480 | 90.21% | 9.79% |
| Aus | 58 | 32.76% | 67.24% |
| Indica I | 341 | 21.41% | 78.59% |
| Indica II | 120 | 32.50% | 67.50% |
| Indica Intermediate | 146 | 45.89% | 54.11% |
| Temperate Japonica | 332 | 94.88% | 5.12% |
| Tropical Japonica | 85 | 80.00% | 20.00% |
| Japonica Intermediate | 63 | 79.37% | 20.63% |
| Group VI/Aromatic | 6 | 33.33% | 66.67% |
| Intermediate | 29 | 62.07% | 37.93% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404523637 | T->C | INTERGENIC | None |