Detailed information of SNP:
|
SNP ID:
sf0404537023(Gbrowse)
Chromosome: chr04 Position: 4537023 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 79.27% | 20.73% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 497 | 65.79% | 34.21% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404537023 | T->C | INTERGENIC | None |