Detailed information of SNP:
|
SNP ID:
sf0404539001(Gbrowse)
Chromosome: chr04 Position: 4539001 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 91.47% | 8.53% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404539001 | C->A | INTERGENIC | None |