Detailed information of SNP:
|
SNP ID:
sf0404542303(Gbrowse)
Chromosome: chr04 Position: 4542303 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 85.61% | 14.39% |
| All Indica | 798 | 77.07% | 22.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 34.91% | 65.09% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404542303 | A->G | LOC_Os04g08450(LOC_Os04g08450.3) | INTRON |
| sf0404542303 | A->G | LOC_Os04g08450(LOC_Os04g08450.2) | INTRON |
| sf0404542303 | A->G | LOC_Os04g08450(LOC_Os04g08450.1) | INTRON |