Detailed information of SNP:
|
SNP ID:
sf0404556559(Gbrowse)
Chromosome: chr04 Position: 4556559 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 78.70% | 21.30% |
| All Indica | 799 | 76.72% | 23.28% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404556559 | C->T | INTERGENIC | None |