Detailed information of SNP:
|
SNP ID:
sf0404578514(Gbrowse)
Chromosome: chr04 Position: 4578514 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 98.14% | 1.86% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 478 | 95.61% | 4.39% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 321 | 96.26% | 3.74% |
| Tropical Japonica | 89 | 91.01% | 8.99% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404578514 | C->T | INTERGENIC | None |