Detailed information of SNP:
|
SNP ID:
sf0404602989(Gbrowse)
Chromosome: chr04 Position: 4602989 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.75% | 26.25% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 497 | 28.37% | 71.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 11.94% | 88.06% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404602989 | A->T | INTERGENIC | None |