Detailed information of SNP:
|
SNP ID:
sf0404603084(Gbrowse)
Chromosome: chr04 Position: 4603084 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 85.65% | 14.35% |
| All Indica | 795 | 84.40% | 15.60% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 64.62% | 35.38% |
| Indica Intermediate | 208 | 77.88% | 22.12% |
| Temperate Japonica | 335 | 90.15% | 9.85% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404603084 | G->A | INTERGENIC | None |