Detailed information of SNP:
|
SNP ID:
sf0404605102(Gbrowse)
Chromosome: chr04 Position: 4605102 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.48% | 10.52% |
| All Indica | 796 | 84.30% | 15.70% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 212 | 80.19% | 19.81% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404605102 | C->T | LOC_Os04g08520(LOC_Os04g08520.1) | Non-Synonymous SNP |