Detailed information of SNP:
|
SNP ID:
sf0404605366(Gbrowse)
Chromosome: chr04 Position: 4605366 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 94.30% | 5.70% |
| All Indica | 770 | 91.69% | 8.31% |
| All Japonica | 494 | 98.38% | 1.62% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 366 | 97.27% | 2.73% |
| Indica II | 202 | 86.63% | 13.37% |
| Indica Intermediate | 202 | 86.63% | 13.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404605366 | G->A | LOC_Os04g08520(LOC_Os04g08520.1) | Non-Synonymous SNP |