Detailed information of SNP:
|
SNP ID:
sf0404653136(Gbrowse)
Chromosome: chr04 Position: 4653136 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 72.12% | 27.88% |
| All Indica | 797 | 94.98% | 5.02% |
| All Japonica | 497 | 30.58% | 69.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404653136 | T->C | INTERGENIC | None |