Detailed information of SNP:
|
SNP ID:
sf0404661165(Gbrowse)
Chromosome: chr04 Position: 4661165 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 92.77% | 7.23% |
| All Indica | 781 | 88.09% | 11.91% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 198 | 68.18% | 31.82% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404661165 | G->A | LOC_Os04g08580(LOC_Os04g08580.1) | Synonymous |