Detailed information of SNP:
|
SNP ID:
sf0404706029(Gbrowse)
Chromosome: chr04 Position: 4706029 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 71.00% | 29.00% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 492 | 22.97% | 77.03% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 17.66% | 82.34% |
| Tropical Japonica | 93 | 43.01% | 56.99% |
| Japonica Intermediate | 65 | 21.54% | 78.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404706029 | T->C | LOC_Os04g08670(LOC_Os04g08670.1) | Synonymous |