Detailed information of SNP:
|
SNP ID:
sf0404706055(Gbrowse)
Chromosome: chr04 Position: 4706055 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 70.55% | 29.45% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 494 | 22.27% | 77.73% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 17.37% | 82.63% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 66 | 19.70% | 80.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404706055 | T->C | LOC_Os04g08670(LOC_Os04g08670.1) | Synonymous |