Detailed information of SNP:
|
SNP ID:
sf0404706717(Gbrowse)
Chromosome: chr04 Position: 4706717 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 63.99% | 36.01% |
| All Indica | 795 | 93.21% | 6.79% |
| All Japonica | 455 | 7.47% | 92.53% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 92.72% | 7.28% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 306 | 2.29% | 97.71% |
| Tropical Japonica | 87 | 25.29% | 74.71% |
| Japonica Intermediate | 62 | 8.06% | 91.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404706717 | T->C | LOC_Os04g08670(LOC_Os04g08670.1) | Non-Synonymous SNP |