Detailed information of SNP:
|
SNP ID:
sf0404757807(Gbrowse)
Chromosome: chr04 Position: 4757807 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 93.37% | 6.63% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 87.32% | 12.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404757807 | A->T | INTERGENIC | None |