Detailed information of SNP:
|
SNP ID:
sf0404801946(Gbrowse)
Chromosome: chr04 Position: 4801946 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 91.70% | 8.30% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 489 | 80.57% | 19.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 332 | 84.04% | 15.96% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 65 | 60.00% | 40.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404801946 | C->G | INTERGENIC | None |