Detailed information of SNP:
|
SNP ID:
sf0404866487(Gbrowse)
Chromosome: chr04 Position: 4866487 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 91.39% | 8.61% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 472 | 79.03% | 20.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 316 | 86.39% | 13.61% |
| Tropical Japonica | 90 | 80.00% | 20.00% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404866487 | T->A | LOC_Os04g08824(LOC_Os04g08824.1) | INTRON |