Detailed information of SNP:
|
SNP ID:
sf0404870975(Gbrowse)
Chromosome: chr04 Position: 4870975 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 93.58% | 6.42% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 451 | 81.82% | 18.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 300 | 73.33% | 26.67% |
| Tropical Japonica | 86 | 98.84% | 1.16% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404870975 | G->T | LOC_Os04g08828(LOC_Os04g08828.1) | UTR_5_PRIME |