Detailed information of SNP:
|
SNP ID:
sf0404898483(Gbrowse)
Chromosome: chr04 Position: 4898483 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 98.09% | 1.91% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 492 | 96.75% | 3.25% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 330 | 96.36% | 3.64% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404898483 | G->A | INTERGENIC | None |